Mark DePristo e050f649fd IncrementalActivityProfile, complete with extensive unit tests ... -- This is an activity profile compatible with fetching its implied active regions incrementally, as activity profile states are added		2013-01-23 13:45:21 -05:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	IncrementalActivityProfile, complete with extensive unit tests	2013-01-23 13:45:21 -05:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Remove DepthOfCoverage.java because it is no longer public	2013-01-10 11:45:38 -05:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Merge branch 'master' of github.com:broadinstitute/gsa-unstable	2013-01-18 15:03:42 -05:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00