aaron e03fccb223 Changes to switch Variant Eval over to the new Variation system. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1611 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-14 05:34:33 +00:00
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bwa	Data structure for counts, to isolate the user from wonky 'sometimes counts are cumulative, other times base-by-base' gotchas.	2009-09-11 20:53:24 +00:00
gatk	Changes to switch Variant Eval over to the new Variation system.	2009-09-14 05:34:33 +00:00
playground	Changes to switch Variant Eval over to the new Variation system.	2009-09-14 05:34:33 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	Changes to switch Variant Eval over to the new Variation system.	2009-09-14 05:34:33 +00:00