asivache e01d37024a now updates mapping quality (to an arbitrary chosen value of 37 if the resulting mapping is unique) and X0, X1 tags after remapping (in REDUCE mode) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1216 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-10 16:40:52 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	now updates mapping quality (to an arbitrary chosen value of 37 if the resulting mapping is unique) and X0, X1 tags after remapping (in REDUCE mode)	2009-07-10 16:40:52 +00:00
test/org/broadinstitute/sting	Refactoring of the traversal engine base class, I removed a lot of old code.	2009-07-09 21:57:00 +00:00