gatk3的最后一个经典版本3.8

Eric Banks dfe4cf1301 When merging the PerReadAlleleLikelihoodMap classes, I forgot to initialize the underlying objects. This was causing the LargeScaleTests to fail.		2013-01-08 09:24:12 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	When merging the PerReadAlleleLikelihoodMap classes, I forgot to initialize the underlying objects. This was causing the LargeScaleTests to fail.	2013-01-08 09:24:12 -05:00
public	remove public-protected dependency by commeting out some code that should be re-included after all the walkers will be in portected (added some todos)	2013-01-07 17:07:23 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Re-enabling contracts in tests in build.xml	2013-01-02 11:29:25 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00