David Roazen e740977994 GATK Engine: do not merge FilePointers that span multiple contigs ... This affects both the non-experimental and experimental engine paths, and so may break tests, but this is a necessary change.		2012-09-27 18:02:25 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	GATK Engine: do not merge FilePointers that span multiple contigs	2012-09-27 18:02:25 -04:00
test	Fixes GSA-515 Nanoscheduler GSA-577 -nt and -nct together appear to not close resources properly	2012-09-24 14:15:35 -04:00