chartl dfa3c3b875 Added: ... SequenomToVCF - Takes a sequenom ped file and converts it to a VCF file with the proper metrics for QC. It's currently a rough draft, but is working as expected on a test ped file, which is included as an integration test. Modified: VCFGenotypeCall -- added a cloneCall() method that returns a clone of the call Hapmap2VCF -- removed a VCFGenotypeCall object that gets instantiated and modified but never used (caused me all kinds of confusion when I was basing SequenomToVCF off of it) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2554 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-11 17:17:21 +00:00
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org/broadinstitute/sting	Added:	2010-01-11 17:17:21 +00:00