ebanks 717eb1de96 - Depth annotation now includes MQ0 reads ... - Removed MQ0 annotation - Updated RMS MQ annotation to use new pileup - UG now outputs all of its arguments as key/value pairs in the header (for VCF) - Cleaned up VCFGenotypeWriterAdapter interface a bit git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2288 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-09 02:53:00 +00:00
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Aligner.xml	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00
CreatePackager.xsl	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00
GATK-Picard.xml	- Depth annotation now includes MQ0 reads	2009-12-09 02:53:00 +00:00
GATKResources.xml	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
GenomeAnalysisTK.xml	- Depth annotation now includes MQ0 reads	2009-12-09 02:53:00 +00:00
PicardPrivate.xml	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00
VCFValidator.xml	Update packaging system to produce multiple jars if asked nicely.	2009-12-03 17:11:12 +00:00