Eric Banks df6499e58c Bug fix for RR: stop (incorrectly) pulling the MQ out of the SAMRecord as a byte instead of an int. ... For reads with high MQs (greater than max byte) the MQ was being treated as negative and failing the min MQ filter. Added unit test. Delivers PT#61567540.		2013-11-27 18:55:03 -05:00
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gatk/walkers	Bug fix for RR: stop (incorrectly) pulling the MQ out of the SAMRecord as a byte instead of an int.	2013-11-27 18:55:03 -05:00
utils	Bugfix for hom ref records that aren't GVCF blocks.	2013-09-29 19:19:26 -04:00