Eric Banks df6499e58c Bug fix for RR: stop (incorrectly) pulling the MQ out of the SAMRecord as a byte instead of an int. ... For reads with high MQs (greater than max byte) the MQ was being treated as negative and failing the min MQ filter. Added unit test. Delivers PT#61567540.		2013-11-27 18:55:03 -05:00
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java	Bug fix for RR: stop (incorrectly) pulling the MQ out of the SAMRecord as a byte instead of an int.	2013-11-27 18:55:03 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00