gatk3的最后一个经典版本3.8
 
 
 
 
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Khalid Shakir df5dd841af AC strat now checks if evals will be merged before throwing an error on multiple eval files.
Minor tweaks to WGP script based on new recal VCF format.
2012-04-19 16:08:55 -04:00
licensing Refactoring/fixing up UG HMM code: a) Make code use PairHMM class instead of having duplicated code. That way UG and HaplotypeCaller now use same core code. Changes to be able to do this: 1. Compute context-dependent GOP as a function of read, not of haplotype, b) Extracted code to initialize HMM arrays into separate method, c) Move PairHMM class and unit test to public, d) Reenable banded code in PairHMM, inverted sense of flag (true=enable feature) but leave off in HaplotypeCaller. 2012-04-17 14:22:48 -04:00
public AC strat now checks if evals will be merged before throwing an error on multiple eval files. 2012-04-19 16:08:55 -04:00
settings Rev. tribble to fix BED codec bug in tribble 51 2012-01-17 16:40:26 -05:00
.gitignore Minor additions to the shared .gitignore file, now that Mark has checked one in. 2011-10-26 12:24:28 -04:00
LICENSE Updated license year 2012-03-27 14:32:02 -04:00
build.xml Added function to get bases from the current base forward in the window in ReferenceContext 2012-04-06 16:07:46 -04:00
ivy.xml S3 upload now directly creates the XML report in memory and puts that in S3 2012-01-29 15:14:58 -05:00