gatk-3.8/python/FlatFileTable.py

20 lines
677 B
Python

#!/usr/bin/env python
import sys, itertools
def record_generator(filename, sep="\t"):
"""Given a file with field headers on the first line and records on subsequent lines,
generates a dictionary for each line keyed by the header fields"""
fin = open(filename)
header = fin.readline().rstrip().split() # pull off header
for line in fin:
fields = line.rstrip().split(sep)
record = dict(itertools.izip(header, fields))
yield record
def record_matches_values(record, match_field_values):
for match_field, match_values in match_field_values:
if record[match_field] not in match_values:
return False
return True