kshakir 6b1b4931e7 Added FCP VE stratifications for Filter, FunctionalClass, and Stratification as requested by Corin. ... Feeding FCP UG the bam list instead of individual bams to cut scatter gather time from O(m^100) as measured by Chris to O(m^1). Fixed NPE when eval values aren't found in PipelineTests. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5694 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-27 02:29:56 +00:00
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core	V2 -- now working -- of a core walker that creates the standard GATK resource bundle	2011-04-20 12:48:47 +00:00
examples	When /etc/mailname is unreadable fall back to the hostname.	2011-04-11 20:22:44 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	Queue graph time is currently of O(n^m) where n = num jobs, m = num unique base files. This script therefore was running in order 1200^16, which I don't think would finish before the heat death of the universe. For now, push down the number of files to 1 and gather them outside of Queue, once I've fixed up scatter-gather in core, outputs can be uncommented.	2011-04-21 12:56:25 +00:00
playground	Added FCP VE stratifications for Filter, FunctionalClass, and Stratification as requested by Corin.	2011-04-27 02:29:56 +00:00