kshakir 9923e05e0a Moved MD5 utils from WalkerTest to BaseTest for use by PipelineTests. ... Moved VariantEval validation from FCPTest to PipelineTest. Cleaned up some duplicate code for writing temp files during tests. Moved FCPTest to playground namespace to match move for FCP.q. Added a basic HelloWorldPipelineTest for the HelloWorld QScript. Moved duplicated error handling from JobRunners into the FunctionEdge. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5068 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-25 04:11:49 +00:00
..
baq	Update Picard / sam-jdk at Tim's request.	2011-01-03 02:17:25 +00:00
bed	Update Picard / sam-jdk at Tim's request.	2011-01-03 02:17:25 +00:00
collections	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
fasta	Update Picard / sam-jdk at Tim's request.	2011-01-03 02:17:25 +00:00
genotype	Moving GLF code to archive	2011-01-15 22:42:42 +00:00
interval	Moved MD5 utils from WalkerTest to BaseTest for use by PipelineTests.	2011-01-25 04:11:49 +00:00
pileup	Stop RBP.getPileupBySample() from throwing a NullPointerException if the	2010-11-23 05:17:06 +00:00
report	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
sam	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
threading	V3 of the distributed GATK. High-efficiency implementation. Support for status tracking for debugging and display. Still not safe for production use due to NFS filelock problem. V4 will use alternative file locking mechanism	2011-01-24 16:45:07 +00:00
BaseUtilsUnitTest.java	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
GenomeLocParserUnitTest.java	Convert GenomeLocParser into an instance variable. This change is required	2010-11-10 17:59:50 +00:00
GenomeLocSortedSetUnitTest.java	vastly improved progress meter that estimates % of work done and time until the job finishes and time remaining. Reordered GATK core initialization order -- intervals are created before the scheduler.	2011-01-12 17:32:27 +00:00
GenomeLocUnitTest.java	Getting back to '-L unmapped':	2010-12-14 18:24:18 +00:00
MathUtilsUnitTest.java	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
PathUtilsUnitTest.java	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
ReservoirDownsamplerUnitTest.java	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
UtilsUnitTest.java	Added the ability to test pipelines in dry or live mode via 'ant pipelinetest' and 'ant pipelinetest -Dpipeline.run=run'.	2010-11-22 22:59:42 +00:00