hanna c806ffba5f Switching over DownsamplingLocusIteratorByState -> LocusIteratorByState. Some operations ... will not be as fast as they could be because the workflow is currently merge sam records (sharding) -> split sam records (LocusIteratorByState) -> merge records (LocusIteraotorByState) -> split records (StratifiedAlignmentContext), but this will be fixed when StratifiedAlignmentContext is updated to take advantage of the new functionality in ReadBackedPileup. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3599 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-21 02:11:42 +00:00
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org/broadinstitute/sting	Switching over DownsamplingLocusIteratorByState -> LocusIteratorByState. Some operations	2010-06-21 02:11:42 +00:00