Eric Banks df033f674d Patch for the incorrect "fixing" of mates when supplementary alignments are present. ... Note that this patch involves ignoring supplementary alignments. Ideally we would want to fix their mates properly but that would require a major refactoring of this soon-to-be deprecated tool.		2015-08-05 12:55:39 -04:00
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src	Patch for the incorrect "fixing" of mates when supplementary alignments are present.	2015-08-05 12:55:39 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.5 development	2015-05-15 00:44:54 -04:00