gatk3的最后一个经典版本3.8

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Eric Banks df033f674d Patch for the incorrect "fixing" of mates when supplementary alignments are present. Note that this patch involves ignoring supplementary alignments. Ideally we would want to fix their mates properly but that would require a major refactoring of this soon-to-be deprecated tool.		2015-08-05 12:55:39 -04:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Patch for the incorrect "fixing" of mates when supplementary alignments are present.	2015-08-05 12:55:39 -04:00
public	Fixed typos and made some argument docs improvements	2015-07-29 23:06:19 -04:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.5 development	2015-05-15 00:44:54 -04:00

The Genome Analysis Toolkit