David Roazen caafe84e74 Rev htsjdk to version 1.132 and picard to version 1.131, and switch to using the versions in maven central ... -We now pull htsjdk and picard from maven central. -Updated the GATK codebase as necessary to adapt to changes in the Feature interface. -Since VCFHeader now requires that all header lines have unique keys, uniquified the keys of GVCFBlock header lines by including the min/max GQ in the key. Updated MD5s accordingly. -Other MD5s changed as a result of an htsjdk fix to eliminate "-0" in VCF output.		2015-05-14 15:26:23 -04:00
..
main/java/org/broadinstitute/gatk	Rev htsjdk to version 1.132 and picard to version 1.131, and switch to using the versions in maven central	2015-05-14 15:26:23 -04:00
test/java/org/broadinstitute/gatk	Rev htsjdk to version 1.132 and picard to version 1.131, and switch to using the versions in maven central	2015-05-14 15:26:23 -04:00