Mark DePristo dee51c4189 Error out when NCT and BAMOUT are used with the HaplotypeCaller ... -- Currently we don't support writing a BAM file from the haplotype caller when nct is enabled. Check in initialize if this is the case, and throw a UserException		2013-06-21 09:25:57 -04:00
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java	Error out when NCT and BAMOUT are used with the HaplotypeCaller	2013-06-21 09:25:57 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00