carneiro c61dd2f09f data processing pipeline now has on the fly bam indexing (powered by Matt) some new parameters, Indel Cleaning with constrain movement and fixMates is gone. ... setting up methods development pipeline for some cosmetic changes. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5277 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-18 23:13:54 +00:00
..
carneiro	data processing pipeline now has on the fly bam indexing (powered by Matt) some new parameters, Indel Cleaning with constrain movement and fixMates is gone.	2011-02-18 23:13:54 +00:00
chartl	Fixing import GenotypeCalculationModel since it doesn't exist anymore.	2011-02-02 15:39:43 +00:00
delangel	Script for calling indels in all phase 1 samples - VQSR part still needs work but raw calling is done	2011-01-22 14:07:10 +00:00
depristo	Removing unused class	2011-02-04 22:22:28 +00:00
fromer	Added GC content calculator for CNV data	2011-02-14 22:29:55 +00:00
hanna	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
kshakir	Removed deprecated getDbsnpFile.	2011-02-08 21:12:15 +00:00
rpoplin	Following Ryan's suggestion, I am moving the Methods Development Calling pipeline to the Core.	2011-02-10 17:36:05 +00:00
QTools.q	Bug fixes in the in process function (spoiled by python: was not closing my writers). SortByRef now works somewhat like the perl script does, rather than doing a memory-expensive sort. Adding a QTools qscript which is kinda clunky, and will be used mostly for integration tests of these IPFs, pending some better way to construct argument collections and function accessors at compile-time.	2011-02-03 17:32:46 +00:00