kshakir dee130ad1b Gather the log files before the actual outputs and mark the log files gatherers as intermediates. ... Since the outputs will only be gathered iff the logs were gathered this allows the job name to change without causing SG to re-run. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5285 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-21 22:04:35 +00:00
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qscript	data processing pipeline now has on the fly bam indexing (powered by Matt) some new parameters, Indel Cleaning with constrain movement and fixMates is gone.	2011-02-18 23:13:54 +00:00
src/org/broadinstitute/sting	Gather the log files before the actual outputs and mark the log files gatherers as intermediates.	2011-02-21 22:04:35 +00:00
test/org/broadinstitute/sting/queue	Defaulting the MFCP to run without a tear script.	2011-02-17 21:13:14 +00:00