gatk3的最后一个经典版本3.8
 
 
 
 
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Mark DePristo de941ddbbe Cleanup Exact model, better unit tests
-- Added combinatorial unit tests for both Diploid and General (in diploid-case) for 2 and 3 alleles in all combinations of sample types (i.e., AA, AB, BB and equiv. for tri-allelic).  More assert statements to ensure quality of the result.
-- Added docs (DOCUMENT YOUR CODE!) to AlleleFrequencyCalculationResult, with proper input error handling and contracts.  Made mutation functions all protected
-- No longer need to call reset on your AlleleFrequencyCalculationResult -- it'd done for you in the calculation function.  reset is a protected method now, so it's all cleaner and nicer this way
-- TODO still -- need to add edge-case tests for non-informative samples (0,0,0), for the impact of priors, and I need to add some way to test the result of the pNonRef
2012-10-03 19:55:11 -07:00
licensing Revert unintentional license change 2012-08-09 17:10:47 -04:00
protected/java Cleanup Exact model, better unit tests 2012-10-03 19:55:11 -07:00
public Cleanup Exact model, better unit tests 2012-10-03 19:55:11 -07:00
settings Updating cofoja to the latest version 2012-08-09 16:36:18 -04:00
.gitignore a few more useful git ignores 2012-09-01 11:08:36 -04:00
build.xml Proper error handling in NanoScheduler 2012-09-19 17:03:13 -04:00
ivy.xml Updating cofoja to the latest version 2012-08-09 16:36:18 -04:00