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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk
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David Roazen c6581e4953 Update MD5s to reflect version number change in the BAM header 
I've confirmed via a script that all of these differences only
involve the version number bump in the BAM headers and nothing
else:

< @HD   VN:1.0  GO:none SO:coordinate
---
> @HD   VN:1.4  GO:none SO:coordinate
 		2013-02-01 13:51:31 -05:00
..
datasources Collapse the downsampling fork in the GATK engine 2013-01-28 01:50:30 -05:00
downsampling Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
executive Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
iterators Refactor LIBS into utils.locusiterator before refactoring 2013-01-11 15:17:16 -05:00
phonehome More aggressive checking of AWS key quality upon startup in the GATK 2013-01-31 09:08:38 -05:00
refdata Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
report Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
samples Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
traversals Collapse the downsampling fork in the GATK engine 2013-01-28 01:50:30 -05:00
walkers Update MD5s to reflect version number change in the BAM header 2013-02-01 13:51:31 -05:00
CommandLineGATKUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
EngineFeaturesIntegrationTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
GenomeAnalysisEngineUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
MaxRuntimeIntegrationTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
WalkerManagerUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00