Eric Banks 03df5e6ee6 - Added more comprehensive tests for consensus creation to RR. Still need to add tests for I/D ops. ... - Added RR qual correctness tests (note that this is a case where we don't add code coverage but still need to test critical infrastructure). - Also added minor cleanup of BaseUtils		2013-02-01 15:37:19 -05:00
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annotator	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
beagle	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
bqsr	Update MD5s to reflect version number change in the BAM header	2013-02-01 13:51:31 -05:00
compression/reducereads	- Added more comprehensive tests for consensus creation to RR. Still need to add tests for I/D ops.	2013-02-01 15:37:19 -05:00
diagnostics	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
diffengine	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
fasta	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
filters	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
genotyper	Move BaseUtils back to the GATK by request, along with associated utility methods	2013-01-30 13:09:44 -05:00
haplotypecaller	Adding unit tests for KBestPaths class and fixing edge case bugs.	2013-02-01 13:51:31 -05:00
indels	Update MD5s to reflect version number change in the BAM header	2013-02-01 13:51:31 -05:00
phasing	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
validation	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
varianteval	Move some VCF/VariantContext methods back to the GATK based on feedback	2013-01-29 16:56:55 -05:00
variantrecalibration	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
variantutils	Move BaseUtils back to the GATK by request, along with associated utility methods	2013-01-30 13:09:44 -05:00