David Roazen f3c94a3c87 Update expected test output for Java 7 ... -Changes in Java 7 related to comparators / sorting produce a large number of innocuous differences in our test output. Updating expectations now that we've moved to using Java 7 internally. -Also incorporate Eric's fix to the GATKSAMRecordUnitTest to prevent intermittent failures.		2013-05-01 16:18:01 -04:00
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AlignmentUtilsUnitTest.java	Major improvements to HC that trims down active regions before genotyping	2013-04-08 12:47:49 -04:00
ArtificialBAMBuilderUnitTest.java	Last manual license update (hopefully)	2013-01-18 16:13:07 -05:00
ArtificialPatternedSAMIteratorUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
ArtificialSAMFileWriterUnitTest.java	PrintReads writes a header when used with -BQSR	2013-02-14 22:19:14 -05:00
ArtificialSAMQueryIteratorUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
ArtificialSAMUtilsUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
ArtificialSingleSampleReadStreamUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
GATKSAMRecordUnitTest.java	Update expected test output for Java 7	2013-05-01 16:18:01 -04:00
MisencodedBaseQualityUnitTest.java	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00
ReadUtilsUnitTest.java	Fixed reported bug in BQSR for RNA seq alignments with Ns.	2013-03-14 11:26:52 -04:00