asivache de0cce87ea new optional arg added that allows to specify a separate bam file to send all piles that fail to realign to; plus minor fixes ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@691 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-13 20:24:23 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	new optional arg added that allows to specify a separate bam file to send all piles that fail to realign to; plus minor fixes	2009-05-13 20:24:23 +00:00
test/org/broadinstitute/sting	Break locus context data access providers into modular components in preparation for traverse by loci.	2009-05-13 18:51:16 +00:00