gatk3的最后一个经典版本3.8

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David Roazen de06eda6ac Dependency analyzer improvements -Add ability to manually specify dependencies on the command line. This allows one to specify, for example, that all walkers depend on the GeneralCallingPipeline QScript, even though they don't have any compile-time dependencies on that QScript. -Check that the provided walker class is valid in DependencyAnalyzer.xml -Check ant exit status in the front-end script -Fix bug where analyzer would give incorrect results if the list of changed Java classes was empty		2013-07-09 13:12:12 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Reduce Reads output should never be expected to be sorted (hence the need to sort on disk) but for some reason it was with -nwayout mode.	2013-07-08 10:33:36 -04:00
public	Merge pull request #310 from broadinstitute/mc_interval_list_to_fastq	2013-07-08 14:30:43 -07:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Fail gracefully in the packaging system when bcel is not installed	2013-07-02 15:50:51 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/