gatk3的最后一个经典版本3.8

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Eric Banks dd85646067 Various small improvements to the KB assessments. 1) TP reviews with 0/0 genotypes were killing those sites and making them appear as assessed FPs even when correctly called! Fixed this by changing the logic in the assessor to allow discordant genotypes through as FPs. Also, isMonomorphic() in the MongoGenotype needs to check whether the genotype is discordant. Added unit test for this case. 2) Minor code cleanup in the Assessor class. The most important being the renaming of isUsableCall() to isNotUsableCall() since that's what it is returning.		2013-08-08 23:37:45 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Merge pull request #364 from broadinstitute/md_vqsr_improvements	2013-08-07 04:37:45 -07:00
public	Merge pull request #359 from lbergelson/lb_relax_add_parameter	2013-08-07 06:45:01 -07:00
settings	Rev picard to get optimized tribble feature reads	2013-08-02 10:31:36 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	build.xml: make ant -p output only important build targets	2013-07-19 14:35:00 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/