Mark DePristo dd75ad9f49 95% PedReader ... -- Passes significiant unit tests -- Implicit sample creation for mom / dad when you create single samples -- Continuing cleanup of Sample and SampleDataSource		2011-09-30 18:03:34 -04:00
..
arguments	Removed -B support. Now explodes with error if -B provided.	2011-08-16 16:13:47 -04:00
datasources	Reorganization of Sample	2011-09-30 15:50:54 -04:00
executive	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
filters	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
iterators	Fixing test bugs for WindowMaker that required empty sample list	2011-09-30 14:18:27 -04:00
refdata	Fix for dynamic type determination for bgzip files	2011-09-21 15:39:19 -04:00
report	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
samples	95% PedReader	2011-09-30 18:03:34 -04:00
traversals	BugFix for unit test	2011-09-07 14:54:10 -04:00
walkers	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-09-24 21:20:11 -04:00
EngineFeaturesIntegrationTest.java	Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.	2011-08-09 12:04:55 -04:00
GenomeAnalysisEngineUnitTest.java	Fixing broken paths to the testdata directory throughout the codebase.	2011-06-29 17:36:47 -04:00
WalkerManagerUnitTest.java	Moving more tools over to use the standard VC arg collection. Also, while I'm in there, I removed all of the empty references to @Requires given that it's no longer relevant.	2011-08-10 12:20:18 -04:00