ebanks dd6d61c031 Adding integration test to cover the case of a read that only covers an insertion (i.e. no M in the CIGAR string). ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5923 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-02 21:02:47 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Patch for case that a read spans only an insertion (i.e. no Ms in the CIGAR string): the end position should not be less than the start position (which is how Picard defines it) but instead should be equal to it. This is just a patch; we'll get a proper solution in at some point.	2011-06-02 20:40:56 +00:00
test	Adding integration test to cover the case of a read that only covers an insertion (i.e. no M in the CIGAR string).	2011-06-02 21:02:47 +00:00