Mark DePristo dd52a70d45 Fix AFCalcResult unit test ... -- I was simply passing in the wrong values into the function. Fixed the calls, and expanded the docs on what needs to be passed in.		2012-12-11 10:40:12 -05:00
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bqsr	Updating tests to handle bad validation data files (that used the wrong qual score encoding); overrides push from stable.	2012-12-03 22:01:07 -05:00
compression/reducereads	Co-Reduction implementation in ReduceReads	2012-11-14 10:33:21 -05:00
genotyper	Fix AFCalcResult unit test	2012-12-11 10:40:12 -05:00
haplotypecaller	Related bug fixes to GGA mode in the HC: some variants (especially MNPs) were causing problems because they don't have to start at the current location to match the allele being genotyped. Fixed.	2012-12-10 14:47:04 -05:00