zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk3的最后一个经典版本3.8
519 Commits
1 Branch
0 Tags
257 MiB
Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
Go to file
jmaguire dd408a2a9a First draft of actual pooled EM caller. 
Produces sane looking output on region of 1kG pilot1:

    CALL NA12813.SRP000031.2009_02.bam CC 0.609084 0.609084
    CALL NA12003.SRP000031.2009_02.bam CC 2.114234 2.114234 CCCCC
    CALL NA06994.SRP000031.2009_02.bam CC 0.910114 0.910114 C
    CALL NA18940.SRP000031.2009_02.bam CT 2.589749 0.910114 T
    CALL NA18555.SRP000031.2009_02.bam CC 0.609084 0.609084

Next up, eval vs. Baseline pilot1 calls and pilot3 deep-coverage truth.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@525 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-04-24 13:42:15 +00:00
c Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
doc Updated the hello world document to reflect system changes. 2009-04-22 23:25:15 +00:00
java First draft of actual pooled EM caller. 2009-04-24 13:42:15 +00:00
python Support for indexBAM command 2009-04-22 19:39:07 +00:00
settings First draft of actual pooled EM caller. 2009-04-24 13:42:15 +00:00
shell Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
testdata Better validation scripts 2009-04-16 23:18:00 +00:00
build.xml Added the base test case, fixed the rest of the test cases to follow suit. Added more verbose output to ant for junit tests. 2009-04-14 17:11:38 +00:00
ivy.xml Added castor dependency. 2009-04-07 22:27:39 +00:00