62 lines
2.8 KiB
Java
Executable File
62 lines
2.8 KiB
Java
Executable File
package org.broadinstitute.sting.utils.broad;
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import org.testng.Assert;
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import org.testng.annotations.Test;
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import java.io.FileNotFoundException;
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public class PicardAggregationUtilsUnitTest {
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public static final String PROJECT = "C474";
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public static final String SAMPLE = "NA19651";
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public static final String MISSING_PROJECT = "C0";
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public static final String MISSING_SAMPLE = "0";
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private int latestVersion = -1;
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@Test
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public void testGetLatestVersion() {
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latestVersion = PicardAggregationUtils.getLatestVersion(PROJECT, SAMPLE);
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System.out.println(String.format("Latest version for %s %s is %d", PROJECT, SAMPLE, latestVersion));
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Assert.assertTrue(latestVersion > 0);
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Assert.assertEquals(PicardAggregationUtils.getLatestVersion(PROJECT, SAMPLE, latestVersion), latestVersion);
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}
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@Test(dependsOnMethods = "testGetLatestVersion")
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public void testGetSampleBam() throws Exception {
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String test = PicardAggregationUtils.getSampleBam(PROJECT, SAMPLE);
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String latest = PicardAggregationUtils.getSampleBam(PROJECT, SAMPLE, latestVersion);
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Assert.assertEquals(test, latest);
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}
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@Test(dependsOnMethods = "testGetLatestVersion")
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public void testGetSampleDir() throws Exception {
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String test = PicardAggregationUtils.getSampleDir(PROJECT, SAMPLE);
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String latest = PicardAggregationUtils.getSampleDir(PROJECT, SAMPLE, latestVersion);
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Assert.assertEquals(test, latest);
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}
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@Test(dependsOnMethods = "testGetLatestVersion")
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public void testIsFinished() {
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Assert.assertTrue(PicardAggregationUtils.isFinished(PROJECT, SAMPLE, latestVersion));
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Assert.assertFalse(PicardAggregationUtils.isFinished(PROJECT, SAMPLE, latestVersion + 1));
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}
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@Test(expectedExceptions = FileNotFoundException.class)
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public void testMissingSampleBam() throws Exception {
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PicardAggregationUtils.getSampleBam(MISSING_PROJECT, MISSING_SAMPLE);
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}
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@Test(expectedExceptions = FileNotFoundException.class)
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public void testMissingSampleDir() throws Exception {
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PicardAggregationUtils.getSampleDir(MISSING_PROJECT, MISSING_SAMPLE);
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}
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@Test
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public void testLatestVersionMissing() {
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Assert.assertEquals(PicardAggregationUtils.getLatestVersion(MISSING_PROJECT, MISSING_SAMPLE), 0);
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Assert.assertEquals(PicardAggregationUtils.getLatestVersion(MISSING_PROJECT, MISSING_SAMPLE, -1), -1);
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Assert.assertEquals(PicardAggregationUtils.getLatestVersion(MISSING_PROJECT, MISSING_SAMPLE, 0), 0);
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Assert.assertEquals(PicardAggregationUtils.getLatestVersion(MISSING_PROJECT, MISSING_SAMPLE, 1), 1);
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Assert.assertEquals(PicardAggregationUtils.getLatestVersion(MISSING_PROJECT, MISSING_SAMPLE, 2), 2);
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}
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}
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