hanna dc62685a2f For Ryan: force creation of BAM index when no reads are present in the BAM ... file. Temporary fix until Picard changes the behavior of indexing. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5351 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-02 01:50:42 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	For Ryan: force creation of BAM index when no reads are present in the BAM	2011-03-02 01:50:42 +00:00
test	EMIT_ALL_SITES now does exactly that - even when there's no coverage or too many deletions	2011-03-01 05:05:00 +00:00