gatk3的最后一个经典版本3.8

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Karthik Gururaj dc44b64ad8 1. Added support for building the PairHMM vector library into build.xml. The library is compiled using makefile and copied into the directory: build/java/classes/org/broadinstitute/sting/utils/pairhmm/ 2. Bundled the library into StingUtils.jar. Unpacked and loaded at runtime without the need to set java.library.path Caveats: Platform independence has probably been thrown out of the window. Assumptions: a. make command exists at /usr/bin/make b. rsync command exists at /usr/bin/rsync c. icc is in the PATH of the user		2014-02-07 13:13:59 -08:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	1. Added support for building the PairHMM vector library into build.xml.	2014-02-07 13:13:59 -08:00
public	Adding comments to pairhmm-template-kernel	2014-02-06 20:13:06 -08:00
settings	Rev'ing the Variant jar to incorporate some patches to the BCF encoder that Menachem needs.	2014-01-02 23:33:17 -05:00
.gitignore	Temporary commit before moving to new native library	2014-01-24 16:29:35 -08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	1. Added support for building the PairHMM vector library into build.xml.	2014-02-07 13:13:59 -08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/