kshakir dc33fbed7c Switched the CVUnitTest broken info from an Integer to a String since as of r5383 Integers are no longer broken when converted to Floats. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5390 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-07 16:33:14 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Initial commit of new likelihood model to evaluate indel quality. Principle is simple, a plain Pair HMM with affine gap penalties (in log space) that does quasi-local alignment between reads and candidate haplotypes and which in theory should be more solid and more reliable than the older Dindel-based model. It also allows to be easily extensible in the future if we decide to introduce either context-dependent and/or read-dependent gap penalties.	2011-03-07 15:31:58 +00:00
test	Switched the CVUnitTest broken info from an Integer to a String since as of r5383 Integers are no longer broken when converted to Floats.	2011-03-07 16:33:14 +00:00