Mark DePristo dc292c0317 FisherStrand now includes all reads and bases, regardless of mapping quality and base quality, just like other annotations ... -- This actually proved to be a problem with Ion Torrent data where the base quality can be quite low, and so we need to include Q15 bases for calling effectively.		2012-07-18 16:07:46 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	FisherStrand now includes all reads and bases, regardless of mapping quality and base quality, just like other annotations	2012-07-18 16:07:46 -04:00
test	- Multi-allelic sites are now correctly ignored - Reporting of mendelian violations enhanced - Corrected TP overflow by caping it to Bye.MAX_VALUE	2012-07-17 15:21:10 -04:00