depristo dbf2344cef Fixes for including duplicate reads in the locus traversal; now checks that the ref arg is provided when needed ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@459 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-17 01:27:36 +00:00
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src/org/broadinstitute/sting	Fixes for including duplicate reads in the locus traversal; now checks that the ref arg is provided when needed	2009-04-17 01:27:36 +00:00
test/org/broadinstitute/sting	Changed interface from contig,pos,length to more common contig,start,stop interface.	2009-04-16 00:04:41 +00:00