rpoplin 9c597309d3 Changed the sizes of the dots and bars on the plots generated by the R script which is called from AnalyzeCovariates.java ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2223 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-02 19:47:48 +00:00
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plot_residualError_OtherCovariate.R	Changed the sizes of the dots and bars on the plots generated by the R script which is called from AnalyzeCovariates.java	2009-12-02 19:47:48 +00:00
plot_residualError_QualityScoreCovariate.R	Initial checkin of AnalyzeCovariates.java which replaces analyzeRecalQuals_1KG.py and is updated to use the new Covariates system. It creates similar plots of residual error for each covariate that was used in the calculation. There is also an option to filter out base qualities below a given threshold.	2009-12-02 16:47:35 +00:00
whole_exome_bait_selection.R	R script for selecting a variety of baits (using %GC content and normalized coverage) for Nanostring assessment from those used in the Agilent whole exome hybrid selection design.	2009-09-22 18:10:14 +00:00