hanna 7893aaefe9 Updates to chunk iteration. Includes the return of the dreaded *2.java files; ... hopefully I can find a way to kill these off before the Picard patch is ready. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2550 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-08 20:20:56 +00:00
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BAMBlockIterator.java	Updates to chunk iteration. Includes the return of the dreaded *2.java files;	2010-01-08 20:20:56 +00:00
BAMChunkIterator.java	Updates to chunk iteration. Includes the return of the dreaded *2.java files;	2010-01-08 20:20:56 +00:00
BAMFileHeaderLoader.java	A rethink of the existing BAM block extraction code: rather than working in	2009-12-30 18:19:51 +00:00
BAMFileReader2.java	Updates to chunk iteration. Includes the return of the dreaded *2.java files;	2010-01-08 20:20:56 +00:00
Block.java	A rethink of the existing BAM block extraction code: rather than working in	2009-12-30 18:19:51 +00:00
BlockReader.java	A rethink of the existing BAM block extraction code: rather than working in	2009-12-30 18:19:51 +00:00
BlockSegment.java	Updates to chunk iteration. Includes the return of the dreaded *2.java files;	2010-01-08 20:20:56 +00:00
BlockTestHarness.java	Updates to chunk iteration. Includes the return of the dreaded *2.java files;	2010-01-08 20:20:56 +00:00
Chunk.java	Updates to chunk iteration. Includes the return of the dreaded *2.java files;	2010-01-08 20:20:56 +00:00
SAMFileReader2.java	Updates to chunk iteration. Includes the return of the dreaded *2.java files;	2010-01-08 20:20:56 +00:00