gatk-3.8/scala/qscript
chartl f8dd59c1d1 Tightening of the batch merging pipeline. Optimized to run on hour queue, so please: if you run this, crush 'hour' with it. Testing is forthcoming, but it merged 700 samples overnight.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4805 348d0f76-0448-11de-a6fe-93d51630548a
2010-12-08 14:36:23 +00:00
..
chartl Tightening of the batch merging pipeline. Optimized to run on hour queue, so please: if you run this, crush 'hour' with it. Testing is forthcoming, but it merged 700 samples overnight. 2010-12-08 14:36:23 +00:00
depristo - After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list. 2010-10-21 06:37:28 +00:00
examples - After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list. 2010-10-21 06:37:28 +00:00
hanna Trying out Queue for the first time. 2010-11-18 18:29:12 +00:00
rpoplin At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. 2010-09-02 21:30:48 +00:00
fullCallingPipeline.q Taking out recalibrating for now, since having these files is confusing people and we've not gone to dbsnp 132 yet so cluster generation's broken with these command lines. 2010-12-03 22:12:09 +00:00
recalibrate.scala - After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list. 2010-10-21 06:37:28 +00:00