gatk-3.8/settings
kshakir db47230dd9 Wrapping ScatterGatherableFunctions with a facade instead of using slower clone library. Will require keeping Clone's facade code in sync with CommandLineFunction but runs *much* faster.
Shell invoking scripts so that even really long shell scripts make it through LSF.
Using the truncated (up to 1000 characters) of the command line for the job name for use with bjobs.
Switched the default from re-running everything to re-running only files that need to be regenerated.  --skip_up_to_date replaced with --start_clean for those who want to regenerate everything.
Updated logging to let users know when the scatter gather generator is running, which still takes a while but is orders of magnatudes faster for large lists of functions.  (40s for a 100 function graph exploding to a 2500 function graph)


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4448 348d0f76-0448-11de-a6fe-93d51630548a
2010-10-07 01:19:18 +00:00
..
repository The battle is over. Picard is revved. 2010-09-03 05:28:01 +00:00
ivysettings.properties Moved build.xml, ivy.xml and settings to root of Sting repository. 2009-03-18 19:13:19 +00:00
ivysettings.xml Wrapping ScatterGatherableFunctions with a facade instead of using slower clone library. Will require keeping Clone's facade code in sync with CommandLineFunction but runs *much* faster. 2010-10-07 01:19:18 +00:00