kiran f838a5e511 Changed some double comparisons of the form a == b to abs(a - b) <= precision. Now we shouldn't be passing or failing some if conditions due to floating-point precision. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@388 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-13 20:05:46 +00:00
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AlleleFrequencyEstimate.java	more verbose gff output!	2009-04-13 15:21:23 +00:00
AlleleMetrics.java	Changed some double comparisons of the form a == b to abs(a - b) <= precision. Now we shouldn't be passing or failing some if conditions due to floating-point precision.	2009-04-13 20:05:46 +00:00
CountedObject.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
CountedObjectComparatorAdapter.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
Interval.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
SimpleInterval.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
TrioConcordanceRecord.java	a few tweaks to make it more robust: ignore reads with cigars containing anything but I,D,M; don't set up contig ordering manually, rely upon reference sequence and its dictionary; don't die if a record does not have NM tag, but faal back to direct counting instead; now requires reference as a cmdline arg	2009-04-13 04:49:19 +00:00
WhitespaceTextFileParser.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00