gatk-3.8/java/src/org/broadinstitute/sting
kiran dae77bf14a Fixed a typo in a comment.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@723 348d0f76-0448-11de-a6fe-93d51630548a
2009-05-15 20:07:31 +00:00
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gatk Better interface to the tabular ROD, now makes writing files easier. Also has corresponding test files 2009-05-14 23:20:11 +00:00
playground bed-style output for IGV 2009-05-15 17:58:44 +00:00
secondarybase Fixed a typo in a comment. 2009-05-15 20:07:31 +00:00
utils Revised ROD system. Split the system in Basic type and interface. Enabled more control over rod accessing, including an initialize() function to fetch headers and other options from the file. Added general tabular rod, which has a named columns and supports a map<String,String> interface. Comes with shiny new Junit system for RODs. Also, added simple python script for accessing picard data. 2009-05-14 21:06:28 +00:00