aaron 09b0b6b57d Fixes to try and speed up unmapped read traversals. Still not nearly as fast as they should be, but the next step would be to modify samtools code. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@592 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-05 18:17:07 +00:00
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gatk	Fixes to try and speed up unmapped read traversals. Still not nearly as fast as they should be, but the next step would be to modify samtools code.	2009-05-05 18:17:07 +00:00
utils	Another pass of command-line arguments. Revised parser supports all types	2009-05-04 22:41:23 +00:00
BaseTest.java	Added some output to all the classes, including build in runtime analysis	2009-04-14 19:14:53 +00:00