Instead of creating a bam list file, I dynamically create a scala list and pass as parameters. This way the intermediate bam files don't get deleted before they should. |
||
|---|---|---|
| .. | ||
| qscript/org/broadinstitute/sting/queue/qscripts | ||
| src/org/broadinstitute/sting/queue | ||
| test/org/broadinstitute/sting/queue | ||