gatk3的最后一个经典版本3.8

David Roazen da1cffbfca Run performance tests in gsa-engineering queue on gsa4 rather than gsa queue ... Running the performance tests on the farm wasn't working out very well -- it's been too long since they've run to completion. Switching back to running them on gsa4 for now.		2012-10-12 14:21:27 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Bug fix when running nondiploid mode in UG with EMIT_ALL_SITES: if site was reference-only, QUAL is produced OK but genotypes were being set to no-call because of unnecessary likelihood normalization. May change integration test md5 which I'll fix later today	2012-10-12 12:45:55 -04:00
public	Missing file are user errors.	2012-10-12 09:48:12 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00