hanna da11efa1a2 Automatically write BAM file indices for coordinate-sorted BAMs. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4209 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-03 14:10:44 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Automatically write BAM file indices for coordinate-sorted BAMs.	2010-09-03 14:10:44 +00:00
test	Fix busted performance test (-outputBam has been deprecated in the BQ recalibrator in favor of -o)	2010-09-03 12:51:53 +00:00