David Roazen d9ea764611 SnpEff annotator now adds OriginalSnpEffVersion and OriginalSnpEffCmd lines to the header of the VCF output file. ... This change is urgently required for production, which is why it's going into Stable+Unstable instead of just Unstable. The keys for the SnpEff version and command header lines in the VCF file output by VariantAnnotator (OriginalSnpEffVersion and OriginalSnpEffCmd) are intentionally different from the keys for those same lines in the SnpEff output file (SnpEffVersion and SnpEffCmd), so that output files from VariantAnnotator won't be confused with output files from SnpEff itself.		2011-09-20 16:30:55 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	SnpEff annotator now adds OriginalSnpEffVersion and OriginalSnpEffCmd lines to the header of the VCF output file.	2011-09-20 16:30:55 -04:00