gatk3的最后一个经典版本3.8

David Roazen d9ea764611 SnpEff annotator now adds OriginalSnpEffVersion and OriginalSnpEffCmd lines to the header of the VCF output file. ... This change is urgently required for production, which is why it's going into Stable+Unstable instead of just Unstable. The keys for the SnpEff version and command header lines in the VCF file output by VariantAnnotator (OriginalSnpEffVersion and OriginalSnpEffCmd) are intentionally different from the keys for those same lines in the SnpEff output file (SnpEffVersion and SnpEffCmd), so that output files from VariantAnnotator won't be confused with output files from SnpEff itself.		2011-09-20 16:30:55 -04:00
public	SnpEff annotator now adds OriginalSnpEffVersion and OriginalSnpEffCmd lines to the header of the VCF output file.	2011-09-20 16:30:55 -04:00
settings	Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.	2011-09-06 20:39:42 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	To work around potential problem with invalid javax.mail 1.4.1 in ivy cache, added explicit javax.mail 1.4.4 along with build.xml code to remove 1.4.1.	2011-09-20 00:14:35 -04:00
ivy.xml	To work around potential problem with invalid javax.mail 1.4.1 in ivy cache, added explicit javax.mail 1.4.4 along with build.xml code to remove 1.4.1.	2011-09-20 00:14:35 -04:00