Mark DePristo c676853731 Merged bug fix from Stable into Unstable. Updating md5s ... Conflicts: protected/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java		2012-11-28 12:54:36 -05:00
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bqsr	Soft clipped bases shouldn't be counted in the delocalized BQSR.	2012-11-25 21:55:29 -05:00
compression/reducereads	Co-Reduction implementation in ReduceReads	2012-11-14 10:33:21 -05:00
genotyper	Merged bug fix from Stable into Unstable. Updating md5s	2012-11-28 12:54:36 -05:00
haplotypecaller	Updating HC integration tests because experimental, HC-specific annotations have been removed.	2012-11-26 12:20:07 -05:00